Refactor: extract migration infrastructure, add has_pending_migration()

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
This commit is contained in:
stumpylog
2026-07-29 11:58:43 -07:00
co-authored by Claude Sonnet 5
parent 668fa77428
commit 4d9c0e8bd5
3 changed files with 144 additions and 47 deletions
+60
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@@ -0,0 +1,60 @@
"""Schema migrations for the sqlite-vec vector store.
Each migration lives in its own module here, named ``mNNNN_description.py``
(e.g. ``m0001_v1_to_v2.py`` -- a leading digit isn't a valid Python
identifier, hence the ``m`` prefix, unlike Django's own numbered migrations,
which load via a dynamic ``importlib.import_module()`` call rather than a
static import statement), and registers itself into ``MIGRATIONS`` at import
time. ``vector_store.py`` imports those modules at the bottom of the file,
purely for that registration side effect, after ``PaperlessSqliteVecVectorStore``
is fully defined -- migrations need it to implement ``apply()`` (see
``Migration`` below).
To add a new migration: add a new ``mNNNN_description.py`` module here that
imports ``PaperlessSqliteVecVectorStore`` from ``paperless_ai.vector_store``,
defines its ``apply()``, and appends a ``Migration`` to ``MIGRATIONS``; then
import that module at the bottom of ``vector_store.py`` and bump
``SCHEMA_VERSION`` there. A migration must freeze its own historical DDL for
any side table its target version depends on (``DROP TABLE IF EXISTS`` +
its own literal ``CREATE TABLE``/``CREATE INDEX`` statements) rather than
delegating to any "current schema" helper -- see ``m0001_v1_to_v2.py`` for
why and the worked example.
"""
import sqlite3
from collections.abc import Callable
from dataclasses import dataclass
from dataclasses import field
from typing import Literal
@dataclass
class Migration:
"""A schema migration for the sqlite-vec vector store.
kind="structural": rows are copied into a new-schema file with no
re-embedding needed. Supply ``apply(src_conn, dst_conn, dim)``, which
must create every table its target schema needs in ``dst_conn`` and copy
``src_conn``'s rows and relevant ``index_meta`` keys into it.
``schema_version`` is written by the migration runner after ``apply``
returns, not by ``apply`` itself.
kind="re-embed": the new schema requires fresh embeddings.
``check_and_run_migrations()`` returns True when it encounters one of
these so the caller can force a full rebuild (which recreates the table
at the current SCHEMA_VERSION).
"""
from_version: int
to_version: int
kind: Literal["structural", "re-embed"]
description: str
apply: Callable[[sqlite3.Connection, sqlite3.Connection, int], None] | None = field(
default=None,
repr=False,
)
# Registry of all schema migrations in order, populated by each migration
# module's import-time registration (see the module docstring above).
MIGRATIONS: list[Migration] = []
+49 -2
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@@ -9,11 +9,11 @@ from llama_index.core.vector_stores.types import MetadataFilter
from llama_index.core.vector_stores.types import MetadataFilters
from llama_index.core.vector_stores.types import VectorStoreQuery
from paperless_ai.migrations import MIGRATIONS
from paperless_ai.migrations import Migration
from paperless_ai.vector_store import DB_FILENAME
from paperless_ai.vector_store import DEFAULT_TABLE_NAME
from paperless_ai.vector_store import MIGRATIONS
from paperless_ai.vector_store import SCHEMA_VERSION
from paperless_ai.vector_store import Migration
from paperless_ai.vector_store import PaperlessSqliteVecVectorStore
from paperless_ai.vector_store import _build_where
@@ -646,3 +646,50 @@ class TestMigrations:
assert result is True
assert self._schema_version(store) == 2
def test_has_pending_migration_false_when_no_table(
self,
store: PaperlessSqliteVecVectorStore,
) -> None:
"""
GIVEN:
- A vector store with no table created yet
WHEN:
- has_pending_migration() is checked
THEN:
- False is returned (nothing to migrate before anything exists)
"""
assert store.has_pending_migration() is False
def test_has_pending_migration_false_at_current_version(
self,
store: PaperlessSqliteVecVectorStore,
) -> None:
"""
GIVEN:
- A store at the current SCHEMA_VERSION
WHEN:
- has_pending_migration() is checked
THEN:
- False is returned
"""
store.add([make_node("a1", "1")])
assert store.has_pending_migration() is False
def test_has_pending_migration_true_when_behind(
self,
store: PaperlessSqliteVecVectorStore,
) -> None:
"""
GIVEN:
- A store whose schema_version has been forced behind SCHEMA_VERSION
WHEN:
- has_pending_migration() is checked
THEN:
- True is returned
"""
store.add([make_node("a1", "1")])
store.client.execute(
"UPDATE index_meta SET value = '0' WHERE key = 'schema_version'",
)
assert store.has_pending_migration() is True
+35 -45
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@@ -2,16 +2,12 @@ import json
import logging
import sqlite3
import struct
from collections.abc import Callable
from collections.abc import Iterator
from collections.abc import Sequence
from contextlib import contextmanager
from dataclasses import dataclass
from dataclasses import field
from pathlib import Path
from types import TracebackType
from typing import Any
from typing import Literal
import sqlite_vec
from llama_index.core.bridge.pydantic import PrivateAttr
@@ -26,6 +22,9 @@ from llama_index.core.vector_stores.types import VectorStoreQueryResult
from llama_index.core.vector_stores.utils import metadata_dict_to_node
from llama_index.core.vector_stores.utils import node_to_metadata_dict
from paperless_ai.migrations import MIGRATIONS
from paperless_ai.migrations import Migration
logger = logging.getLogger("paperless_ai.vector_store")
DB_FILENAME = "llmindex.db"
@@ -53,38 +52,6 @@ COMPACT_BATCH_SIZE = 500
_FILTER_COLUMNS = frozenset({"document_id", "modified"})
@dataclass
class Migration:
"""A schema migration for the sqlite-vec vector store.
kind="structural": rows are copied into a new-schema file with no
re-embedding needed. Supply ``apply(src_conn, dst_conn, dim)`` which
must create the vec0 table in ``dst_conn``, copy all rows from
``src_conn``, and write ``dim`` / ``embed_model`` / ``total_inserts`` to
``dst_conn``'s ``index_meta``. ``schema_version`` is written by the
migration runner after ``apply`` returns.
kind="re-embed": the new schema requires fresh embeddings.
``check_and_run_migrations()`` returns True when it encounters one of
these so the caller can force a full rebuild (which recreates the table
at the current SCHEMA_VERSION).
"""
from_version: int
to_version: int
kind: Literal["structural", "re-embed"]
description: str
apply: Callable[[sqlite3.Connection, sqlite3.Connection, int], None] | None = field(
default=None,
repr=False,
)
# Registry of all schema migrations in order. Empty at v1 -- this is the
# baseline. Add entries here (and bump SCHEMA_VERSION) when the schema changes.
MIGRATIONS: list[Migration] = []
def _pack(embedding: Sequence[float]) -> bytes:
return struct.pack(f"{len(embedding)}f", *embedding)
@@ -551,6 +518,31 @@ class PaperlessSqliteVecVectorStore(BasePydanticVectorStore):
Path(compact_path).replace(db_path)
self._conn = self._open_connection(db_path)
def _stored_schema_version(self) -> int | None:
"""The schema_version recorded in index_meta, or None if no table
exists. A missing key (a store predating version tracking) is
treated as SCHEMA_VERSION -- i.e. already current -- since no
migration in MIGRATIONS targets a version before tracking began.
"""
if not self.table_exists():
return None
raw = self._meta_get("schema_version")
return int(raw) if raw is not None else SCHEMA_VERSION
def has_pending_migration(self) -> bool:
"""Cheaply check whether a migration is pending, with no exclusive
access needed -- just a metadata read under the connection callers
already hold via the write FileLock.
Callers should only pay for check_and_run_migrations()'s exclusive
access (a structural migration's file swap must not run while
readers are active) when this returns True, so that the common
case -- already at SCHEMA_VERSION -- never contends with readers
or a concurrent compaction.
"""
current = self._stored_schema_version()
return current is not None and current < SCHEMA_VERSION
def check_and_run_migrations(self) -> bool:
"""Apply any pending schema migrations to the store.
@@ -559,15 +551,13 @@ class PaperlessSqliteVecVectorStore(BasePydanticVectorStore):
this method returns True when one is encountered so the caller can
force a full rebuild (which recreates the table at SCHEMA_VERSION).
Must be called under the write FileLock. No-op when the table does
not exist or is already at SCHEMA_VERSION.
Must be called under the write FileLock, with readers excluded (see
has_pending_migration() for a cheap pre-check that avoids paying for
that exclusion in the common case). No-op when the table does not
exist or is already at SCHEMA_VERSION.
"""
if not self.table_exists():
return False
raw = self._meta_get("schema_version")
current = int(raw) if raw is not None else SCHEMA_VERSION
if current >= SCHEMA_VERSION:
current = self._stored_schema_version()
if current is None or current >= SCHEMA_VERSION:
return False
pending = sorted(
@@ -579,7 +569,7 @@ class PaperlessSqliteVecVectorStore(BasePydanticVectorStore):
if migration.kind == "re-embed":
logger.warning(
"LLM index schema v%d -> v%d requires re-embedding (%s); "
"forcing full rebuild.",
"the caller must force a rebuild.",
migration.from_version,
migration.to_version,
migration.description,