Enables prek workspace mode and moves hooks to specific locations as possible, moving to mdformat instead of prettier

Bumps [nltk](https://github.com/nltk/nltk) from 3.9.2 to 3.9.3.
- [Changelog](https://github.com/nltk/nltk/blob/develop/ChangeLog)
- [Commits](https://github.com/nltk/nltk/compare/3.9.2...3.9.3)

---
updated-dependencies:
- dependency-name: nltk
  dependency-version: 3.9.3
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

.pre-commit-config.yaml

@@ -1,9 +1,4 @@
-# This file configures pre-commit hooks.
-# See https://pre-commit.com/ for general information
-# See https://pre-commit.com/hooks.html for a listing of possible hooks
-# We actually run via https://github.com/j178/prek which is compatible
 repos:
-  # General hooks
   - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v6.0.0
     hooks:
@@ -11,21 +6,16 @@ repos:
       - id: check-json
         exclude: "tsconfig.*json"
       - id: check-yaml
-        args:
+        args: ["--unsafe"]
-          - "--unsafe"
       - id: check-toml
       - id: check-executables-have-shebangs
       - id: end-of-file-fixer
-        exclude_types:
+        exclude_types: [svg, pofile]
-          - svg
-          - pofile
         exclude: "(^LICENSE$|^src/documents/static/bootstrap.min.css$)"
       - id: mixed-line-ending
-        args:
+        args: ["--fix=lf"]
-          - "--fix=lf"
       - id: trailing-whitespace
-        exclude_types:
+        exclude_types: [svg]
-          - svg
       - id: check-case-conflict
       - id: detect-private-key
   - repo: https://github.com/codespell-project/codespell
@@ -33,53 +23,29 @@ repos:
     hooks:
       - id: codespell
         additional_dependencies: [tomli]
-        exclude_types:
+        exclude_types: [pofile, json]
-          - pofile
+  - repo: https://github.com/google/yamlfmt
-          - json
+    rev: v0.21.0
-  # See https://github.com/prettier/prettier/issues/15742 for the fork reason
-  - repo: https://github.com/rbubley/mirrors-prettier
-    rev: 'v3.8.1'
     hooks:
-      - id: prettier
+      - id: yamlfmt
-        types_or:
+        exclude: "^src-ui/pnpm-lock.yaml"
-          - javascript
+        types: [yaml]
-          - ts
-          - markdown
-        additional_dependencies:
-          - prettier@3.3.3
-          - 'prettier-plugin-organize-imports@4.1.0'
-  # Python hooks
-  - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.0
-    hooks:
-      - id: ruff-check
-      - id: ruff-format
-  - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: "v2.12.1"
-    hooks:
-      - id: pyproject-fmt
-  # Dockerfile hooks
   - repo: https://github.com/AleksaC/hadolint-py
     rev: v2.14.0
     hooks:
       - id: hadolint
-  # Shell script hooks
   - repo: https://github.com/lovesegfault/beautysh
     rev: v6.4.2
     hooks:
       - id: beautysh
         types: [file]
         files: (\.sh$|/run$|/finish$)
-        args:
+        args: ["--tab"]
-          - "--tab"
   - repo: https://github.com/shellcheck-py/shellcheck-py
     rev: "v0.11.0.1"
     hooks:
       - id: shellcheck
-  - repo: https://github.com/google/yamlfmt
+  - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v0.21.0
+    rev: "v2.16.2"
     hooks:
-      - id: yamlfmt
+      - id: pyproject-fmt
-        exclude: "^src-ui/pnpm-lock.yaml"
-        types:
-          - yaml

docker/.pre-commit-config.yaml

@@ -0,0 +1,6 @@
+repos:
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.15.4
+    hooks:
+      - id: ruff-check
+      - id: ruff-format

docs/.markdownlint.yaml

@@ -0,0 +1,6 @@
+default: true
+MD013: false # line length -- mdformat handles this
+MD033: false # inline HTML -- MkDocs uses it
+MD041: false # first line heading -- not always true in MkDocs
+MD046: # code block style
+  style: fenced

docs/.pre-commit-config.yaml

@@ -0,0 +1,13 @@
+repos:
+  - repo: https://github.com/executablebooks/mdformat
+    rev: 1.0.0
+    hooks:
+      - id: mdformat
+        additional_dependencies:
+          - mdformat-mkdocs
+          - mdformat-ruff
+  - repo: https://github.com/DavidAnson/markdownlint-cli2
+    rev: v0.21.0
+    hooks:
+      - id: markdownlint-cli2
+        args: ["--config", ".markdownlint.yaml"]

src-ui/.pre-commit-config.yaml

@@ -0,0 +1,9 @@
+repos:
+  - repo: https://github.com/rbubley/mirrors-prettier
+    rev: 'v3.8.1'
+    hooks:
+      - id: prettier
+        types_or: [javascript, ts]
+        additional_dependencies:
+          - prettier@3.3.3
+          - 'prettier-plugin-organize-imports@4.1.0'

src/.pre-commit-config.yaml

@@ -0,0 +1,10 @@
+orphan: true
+
+repos:
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.15.4
+    hooks:
+      - id: ruff-check
+      - id: ruff-format
+
+

uv.lock

@@ -2811,7 +2811,7 @@ wheels = [
 
 [[package]]
 name = "nltk"
-version = "3.9.2"
+version = "3.9.3"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "click", marker = "sys_platform == 'darwin' or sys_platform == 'linux'" },
@@ -2819,9 +2819,9 @@ dependencies = [
     { name = "regex", marker = "sys_platform == 'darwin' or sys_platform == 'linux'" },
     { name = "tqdm", marker = "sys_platform == 'darwin' or sys_platform == 'linux'" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/f9/76/3a5e4312c19a028770f86fd7c058cf9f4ec4321c6cf7526bab998a5b683c/nltk-3.9.2.tar.gz", hash = "sha256:0f409e9b069ca4177c1903c3e843eef90c7e92992fa4931ae607da6de49e1419", size = 2887629, upload-time = "2025-10-01T07:19:23.764Z" }
+sdist = { url = "https://files.pythonhosted.org/packages/e1/8f/915e1c12df07c70ed779d18ab83d065718a926e70d3ea33eb0cd66ffb7c0/nltk-3.9.3.tar.gz", hash = "sha256:cb5945d6424a98d694c2b9a0264519fab4363711065a46aa0ae7a2195b92e71f", size = 2923673, upload-time = "2026-02-24T12:05:53.833Z" }
 wheels = [
-    { url = "https://files.pythonhosted.org/packages/60/90/81ac364ef94209c100e12579629dc92bf7a709a84af32f8c551b02c07e94/nltk-3.9.2-py3-none-any.whl", hash = "sha256:1e209d2b3009110635ed9709a67a1a3e33a10f799490fa71cf4bec218c11c88a", size = 1513404, upload-time = "2025-10-01T07:19:21.648Z" },
+    { url = "https://files.pythonhosted.org/packages/c2/7e/9af5a710a1236e4772de8dfcc6af942a561327bb9f42b5b4a24d0cf100fd/nltk-3.9.3-py3-none-any.whl", hash = "sha256:60b3db6e9995b3dd976b1f0fa7dec22069b2677e759c28eb69b62ddd44870522", size = 1525385, upload-time = "2026-02-24T12:05:46.54Z" },
 ]
 
 [[package]]